Dear @kdobe,
For what it's worth, I want to add that I just tested this with other applications, and this problem is not limited to Isadora. It seems in 10.9 (and I'm assuming 10.10) that after the startup items are opened, the Finder has the focus -- i.e., it's is the frontmost app. (I tried this with QT Player, AppleScript Editor, Safari, etc.)
Since you're not the only who's going to need this fix, I created a knowledge base article with the whole procedure spelled out.
http://troikatronix.com/support/kb/stage-front-login-item/
Note: I'm not sure why you were using two command F's... one command G would do, no? Anyway... that's how my AppleScript works.
Best Wishes,
Mark